Big trouble installing macs2

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chip-seq atac-seq dnase-seq peak-caller Python

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  • MACS

    MACS -- Model-based Analysis of ChIP-Seq

    • Try making a conda env using their install instructions and then adding the package last (https://github.com/macs3-project/MACS/blob/master/docs/INSTALL.md). I haven't used this package before, but it looks finicky, so be patient trying to set it up on your system

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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