Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid. (by steineggerlab)
kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken). (by smdabdoub)
| Metabuli | kraken-biom | |
|---|---|---|
| 1 | 1 | |
| 62 | 43 | |
| - | - | |
| 9.0 | 0.0 | |
| about 1 month ago | about 2 years ago | |
| C++ | Python | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Metabuli
Posts with mentions or reviews of Metabuli.
We have used some of these posts to build our list of alternatives
and similar projects.
kraken-biom
Posts with mentions or reviews of kraken-biom.
We have used some of these posts to build our list of alternatives
and similar projects.
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Differences between read based abundancy estimation programs? (metagenomics)
The issue is that after performing a taxonomic classification using kraken2, I want to create abundance tables regarding this taxonomic classification outputs. Some people have recommended me to use kraken--biom (https://github.com/smdabdoub/kraken-biom) and some others recommended me to use bracken (https://ccb.jhu.edu/software/bracken/index.shtml?t=manual).
What are some alternatives?
When comparing Metabuli and kraken-biom you can also consider the following projects:
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite
atlas - ATLAS - Three commands to start analyzing your metagenome data
dada2 - Accurate sample inference from amplicon data with single nucleotide resolution
drep - Rapid comparison and dereplication of genomes
GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.