Protein

Open-source projects categorized as Protein
Edit details
Language: + Python + Rust + Jupyter Notebook + Go + HTML
Topics: protein-structure Python Bioinformatics Dna Genomics
Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured

Top 14 Protein Open-Source Projects

  • Biopython

    Official git repository for Biopython (originally converted from CVS)

    • Project mention: Invitación a proyecto - Biopython en Español | /r/devsarg | 2023-07-23

  • graphein

    Protein Graph Library

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • MolecularNodes

    Toolbox for molecular animations in Blender, powered by Geometry Nodes.

    • Project mention: Rendering protein structures inside cells at the atomic level with Unreal Engine | news.ycombinator.com | 2024-02-29

  • progen

    Official release of the ProGen models

    • Project mention: Large language models generate functional protein sequences across families | news.ycombinator.com | 2023-05-13

    I was supposed to be reply to another comment. The GitHub is from 2022:

    https://github.com/salesforce/progen

  • pyfaidx

    Efficient pythonic random access to fasta subsequences

  • ribbon

    Ribbon diagrams of proteins in #golang. (by fogleman)

  • awesome-AI-based-protein-design

    A collection of research papers for AI-based protein design

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo

  • deepblast

    Neural Networks for Protein Sequence Alignment

    • Project mention: [D] To all the machine learning engineers: most difficult model task/type you’ve ever had to work with? | /r/MachineLearning | 2023-07-03

  • orfipy

    Fast and flexible ORF finder

  • reCOGnizer

    A tool for domain based annotation with databases from the Conserved Domains Database

  • ProteinStructurePrediction

    Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.

  • protein_physicochemical_properties_calculator

    ProtParam based program that outputs the id, pI, charge and molecular weight of each protein

  • MetaBioCargo

    Meta-Bio-Cargo predict #Ru-Bi-CO-S protein

  • rosalind

    Bioinformatics library for DNA, RNA and protein sequence analysis. Based on the exercises of Rosalind website.

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Protein related posts

  • Rendering protein structures inside cells at the atomic level with Unreal Engine

    2 projects | news.ycombinator.com | 29 Feb 2024

  • Large language models generate functional protein sequences across families

    3 projects | news.ycombinator.com | 13 May 2023

  • What is a recent scientific discovery that you find exciting?

    2 projects | /r/AskScienceDiscussion | 7 May 2023

  • Is there a way to achieve a similar COG annotation for Haloferax mediterranei?

    1 project | /r/bioinformatics | 10 Apr 2023

  • Is there a way to achieve a similar COG annotation for Haloferax mediterranei?

    1 project | /r/proteomics | 10 Apr 2023

  • [R] Large language models generate functional protein sequences across diverse families

    1 project | /r/MachineLearning | 26 Feb 2023

  • Salesforce/progen: projects and models for protein engineering and design

    1 project | news.ycombinator.com | 29 Jan 2023
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 2 May 2024
    Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

Index

What are some of the best open-source Protein projects? This list will help you:

Project Stars
1 Biopython 4,171
2 graphein 978
3 MolecularNodes 788
4 progen 559
5 pyfaidx 440
6 ribbon 239
7 awesome-AI-based-protein-design 182
8 deepblast 97
9 orfipy 46
10 reCOGnizer 26
11 ProteinStructurePrediction 9
12 protein_physicochemical_properties_calculator 2
13 MetaBioCargo 0
14 rosalind 0

Sponsored
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com