Top 5 genome-assembly Open-Source Projects

• megahit

  1 563 0.0 C++

  Ultra-fast and memory-efficient (meta-)genome assembler

• nanopolish

  1 544 5.2 C++

  Signal-level algorithms for MinION data

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• RagTag

  5 436 0.0 Python

  Tools for fast and flexible genome assembly scaffolding and improvement

• pestalotiopsis

  1 7 0.0 Python

  Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.

  

• DIF

  2 2 3.6 Jupyter Notebook

  "DNA IMAGE FOOTPRINT" The main idea is to convert a DNA sequence to an image to find any related sequences in the image with common algorithms (by MahdiKarimian)

• SaaSHub

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genome-assembly related posts

• Bacterial reference-guided assembly vs. de-novo assembly unicycler?

  2 projects | /r/bioinformatics | 1 May 2023

• Question about genome assembly tools

  1 project | /r/bioinformatics | 29 Mar 2023

• how to improve denovo genome assembly with additional sequencing data.

  1 project | /r/bioinformatics | 25 Feb 2023

• Recommended tools for reference-guided genome assembly

  2 projects | /r/bioinformatics | 17 Aug 2022

• Sequencing your DNA with a USB dongle and open source code

  3 projects | news.ycombinator.com | 26 Dec 2021

• How to find sequence variations from contigs

  3 projects | /r/bioinformatics | 5 Dec 2021
• A note from our sponsor - SaaSHub
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