Recommended tools for reference-guided genome assembly

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • mira

    MIRA sequence assembler

  • Alternatively, you can use MIRA (https://github.com/bachev/mira)

  • RagTag

    Tools for fast and flexible genome assembly scaffolding and improvement

  • RagTag. Not sure how well it works for small genomes.

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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