Top 9 nanopore Open-Source Projects

• Sniffles

  1 508 7.7 Python

  Structural variation caller using third generation sequencing

• bonito

  8 373 7.3 Python

  A PyTorch Basecaller for Oxford Nanopore Reads

  

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• pepper

  1 231 0.0 Python

  PEPPER-Margin-DeepVariant (by kishwarshafin)

• awesome-nanopore

  1 210 5.2

  A curated list of awesome nanopore analysis tools.

  

• mag

  2 182 9.4 Nextflow

  Assembly and binning of metagenomes

  

• bambu

  1 163 5.7 R

  Reference-guided transcript discovery and quantification for long read RNA-Seq data

  

• modkit

  1 105 9.2 Rust

  A bioinformatics tool for working with modified bases

  

Project mention: Methylation calling on Oxford Nanopore reads | /r/bioinformatics | 2023-12-01

According to the modkit documentation, modified bases are stored in the MM and ML tags, assuming the BAM file has been generated with modified bases enabled as an option:

• SaaSHub

  www.saashub.com featured

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

• wengan

  1 83 0.0 Perl

  An accurate and ultra-fast hybrid genome assembler

• pestalotiopsis

  1 7 0.0 Python

  Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.

  

nanopore related posts

• miRNA Detection

  1 project | /r/biotechnology | 13 Nov 2022

• Oxford University Press’s new logo is unfathomably bad

  1 project | news.ycombinator.com | 10 Nov 2022

• PORTABLE DNA SEQUENCER!!!!

  1 project | /r/genetics | 10 Aug 2022

• El primer genoma completo de un ser humano abre una nueva era en la ciencia

  1 project | /r/brasilnoticias | 31 Mar 2022

• Buying artificial membranes

  1 project | /r/SyntheticBiology | 12 Jan 2022

• ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?

  1 project | /r/explainlikeimfive | 7 Jan 2022

• Sequencing your DNA with a USB dongle and open source code

  3 projects | news.ycombinator.com | 26 Dec 2021
• A note from our sponsor - SaaSHub
  www.saashub.com | 6 May 2024

  SaaSHub helps you find the best software and product alternatives Learn more →

Index

Sponsored

SaaSHub - Software Alternatives and Reviews

SaaSHub helps you find the best software and product alternatives

www.saashub.com