bonito

A PyTorch Basecaller for Oxford Nanopore Reads (by nanoporetech)

Bonito Alternatives

Similar projects and alternatives to bonito

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better bonito alternative or higher similarity.

bonito reviews and mentions

Posts with mentions or reviews of bonito. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-05-02.
  • miRNA Detection
    1 project | /r/biotechnology | 13 Nov 2022
    There is a technology called Nanopore. I’ve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!
  • Oxford University Press’s new logo is unfathomably bad
    1 project | news.ycombinator.com | 10 Nov 2022
    > An unpopular opinion: there are too many other logos that look like the original logo

    There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].

    [1]: https://en.wikipedia.org/wiki/Tarmac_(company)

    [2]: https://nanoporetech.com/

  • PORTABLE DNA SEQUENCER!!!!
    1 project | /r/genetics | 10 Aug 2022
  • Ask HN: Who is hiring? (May 2022)
    23 projects | news.ycombinator.com | 2 May 2022
    Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)

    Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.

    Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC

    For more details, please email: [email protected]

  • El primer genoma completo de un ser humano abre una nueva era en la ciencia
    1 project | /r/brasilnoticias | 31 Mar 2022
  • Buying artificial membranes
    1 project | /r/SyntheticBiology | 12 Jan 2022
    Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).
  • ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?
    1 project | /r/explainlikeimfive | 7 Jan 2022
    Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing
  • Raw nanowire sequencer data
    2 projects | /r/bioinformatics | 26 Jun 2021
    Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 25 Apr 2024
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Stats

Basic bonito repo stats
8
372
7.3
4 months ago

nanoporetech/bonito is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

The primary programming language of bonito is Python.


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