Top 14 Genetic Open-Source Projects

• Hail

  5 939 9.8 Python

  Cloud-native genomic dataframes and batch computing

  

• self-parking-car-evolution

  5 710 0.0 TypeScript

  🧬 Training the car to do self-parking using a genetic algorithm

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• gggenes

  1 468 6.0 R

  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

• OSGenome

  2 107 3.2 Python

  An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

• chatGPT-for-genetics

  1 90 0.0 Python

  Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

• GeneLab_Data_Processing

  1 56 9.2 Jupyter Notebook
  

• fastbaps

  0 51 0.0 R

  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

• SaaSHub

  www.saashub.com featured

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• innit

  3 45 3.1 Rust

  A roguelike game where you play a micro organism inside a larger organism!

• Genetic-Trait-Detector

  5 29 5.2 Python

  This python script detects known traits in raw human genetic data.

Project mention: Python script detects traits in raw human genetic data | news.ycombinator.com | 2023-09-18

• Parameterize.Net

  2 26 0.0 C#

  Parameterize.Net is a library that allows developers to represent complex objects using float array.

  

• codex

  3 25 6.9 JavaScript

  A minimal genetic data explorer that processes all genetic information locally. (by brandonsaldan)

Project mention: Show HN: GeneCodex – A free and open source genetic varient viewer | news.ycombinator.com | 2023-05-26

Hi everyone!

I'm thrilled to announce and introduce GeneCodex, the trailblazing project that unveils the untapped power of your genetic information.

With GeneCodex, we bring you a groundbreaking approach to personalized insights. By processing your genetic data directly in your browser and leveraging the extensive SNPedia database, we empower you with a wealth of valuable information about your unique DNA.

Discover the genetic variants associated with susceptible health conditions, uncover fascinating insights into appearance traits, delve into the secrets of your personality, and so much more.

GeneCodex is, and will always be free to use. Your DNA files are processed locally, in-browser, and are not saved or sent outside of your computer. All of this, combined with an easy to use user interface provides you with the opportunity to learn more about yourself than you've ever thought to be possible.

GeneCodex is also entirely open source for maximum transparency: https://github.com/brandonsaldan/codex

Our mission is to provide you with a user-friendly platform that enables you to explore the hidden secrets of your genes. Join us on this incredible journey of self-discovery and unlock a new level of understanding about yourself.

Try out GeneCodex for yourself if you have raw DNA from AncestryDNA, 23andMe, or FamilyTreeDNA! https://codex-brandonsaldan.vercel.app/

We welcome your input! Don't hesitate to share your comments, questions, or suggestions down below! ⤵

• Structure_threader

  1 24 3.3 Python

  A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".

• 13andGene

  1 4 2.6 JavaScript

  A fun oracle for Eurogenes K13.

• sgkit

  1 0 5.9 HTML

  We've moved to https://github.com/sgkit-dev/sgkit

  

• SaaSHub

  www.saashub.com featured

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

Genetics related posts

• Show HN: GeneCodex – A free and open source genetic varient viewer

  2 projects | news.ycombinator.com | 26 May 2023

• We're wasting money by only supporting gzip for raw DNA files

  6 projects | news.ycombinator.com | 9 Jan 2023

• Software engineers: consider working on genomics

  6 projects | news.ycombinator.com | 19 Nov 2022

• Has anyone stored/queried VCFs and their variant records in a relational database?

  2 projects | /r/bioinformatics | 12 Nov 2022

• AWS doesn't make sense for scientific computing

  1 project | news.ycombinator.com | 7 Oct 2022

• What are some non-pathogenic alleles of the SNCA gene, or how do I find them?

  1 project | /r/genetics | 2 Apr 2022

• Sharing Saturday #395

  2 projects | /r/roguelikedev | 31 Dec 2021
• A note from our sponsor - InfluxDB
  www.influxdata.com | 15 May 2024

  Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

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