Sgkit Alternatives
Similar projects and alternatives to sgkit based on common topics and language
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TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better sgkit alternative or higher similarity.
sgkit reviews and mentions
Posts with mentions or reviews of sgkit.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-11-12.
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Has anyone stored/queried VCFs and their variant records in a relational database?
I once built on top of a library that used the zarr format for storing the vcf data. It allowed me to parse over it like it was a pandas dataframe and incredibly fast. sgkit is the successor library and seems to be growing really well, but I haven't played with it. I do have high hopes for the zarr format, but I am biased
Stats
Basic sgkit repo stats
1
0
5.9
about 1 month ago
pystatgen/sgkit is an open source project licensed under Apache License 2.0 which is an OSI approved license.
The primary programming language of sgkit is HTML.
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