atac-seq

Open-source projects categorized as atac-seq
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Language: + Cython + Nextflow + R + Python
Topics: Pipeline Python chip-seq Workflow dnase-seq
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Top 5 atac-seq Open-Source Projects

  • awesome-single-cell

    Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  • MACS

    MACS -- Model-based Analysis of ChIP-Seq

    • Project mention: Can i cluster or PCA ChIP peak score from different TFs to see which TFs have similar targets? | /r/bioinformatics | 2023-06-14

    Maybe not? Have a look at this: https://github.com/macs3-project/MACS/issues/123

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • atacseq

    ATAC-seq peak-calling and QC analysis pipeline

  • wiggleplotr

    A small R package to make sequencing read coverage plots in R.

  • chipseq-smk-pipeline

    ChIP-Seq processing pipeline on snakemake

  • SaaSHub

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

atac-seq related posts

  • Can i cluster or PCA ChIP peak score from different TFs to see which TFs have similar targets?

    1 project | /r/bioinformatics | 14 Jun 2023

  • Big trouble installing macs2

    1 project | /r/bioinformatics | 30 Mar 2022

  • What is the meaning of the ATACseq score?

    1 project | /r/bioinformatics | 17 Sep 2021

Index

What are some of the best open-source atac-seq projects? This list will help you:

Project Stars
1 awesome-single-cell 2,927
2 MACS 684
3 atacseq 161
4 wiggleplotr 33
5 chipseq-smk-pipeline 3

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