Wiggleplotr Alternatives

Similar projects and alternatives to wiggleplotr based on common topics and language

ggtranscript

1 118 10.0 R wiggleplotr VS ggtranscript

Visualizing transcript structure and annotation using ggplot2
rna-seq-kallisto-sleuth

1 63 5.9 Python wiggleplotr VS rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
InfluxDB

www.influxdata.com featured

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
bambu

1 163 5.7 R wiggleplotr VS bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data
clustifyr

1 101 4.9 R wiggleplotr VS clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
maftools

3 415 6.6 R wiggleplotr VS maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
orthologr

1 83 7.3 R wiggleplotr VS orthologr

Genome wide orthology inference and dNdS estimation
ermineR

1 6 0.0 R wiggleplotr VS ermineR

R wrapper for ermineJ
SaaSHub

www.saashub.com featured

SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better wiggleplotr alternative or higher similarity.

Suggest an alternative to wiggleplotr

wiggleplotr reviews and mentions

Posts with mentions or reviews of wiggleplotr. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-03.

representing gene/transcript layout with variants, suitable approaches?
2 projects | /r/bioinformatics | 3 Mar 2023

https://github.com/dzhang32/ggtranscript and https://github.com/kauralasoo/wiggleplotr look like good starting points, and since they output ggplot objects you can add some layers (like geom_segment or other geometries, and ggrepel for labels) to annotate them. Otherwise you can go the "from scratch" route using ggplot with some polygons and segments.