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Development notes in Snakemake workflows
1 project | /r/bioinformatics | 7 Nov 2021

I currently use cookiecutter to start new Snakemake repositories (projects) because it's really comfortable and guarantees that I follow an organized and recommended directory structure. However, I have a tendency to make notes during development. Maybe I made some decision based on something I learned in biostars or reddit and I want to remember that, or I start by outlining my workflow steps in written form. So far I've used both the README file and the Snakemake file (comments) to do that, but I'm wondering if anyone has a suggestion for how to fit development notes within a Snakemake project.