cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows (by snakemake-workflows)
hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data (by shandley)
| cookiecutter-snakemake-workflow | hecatomb | |
|---|---|---|
| 1 | 1 | |
| 55 | 41 | |
| - | - | |
| 1.8 | 8.5 | |
| over 2 years ago | about 2 months ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cookiecutter-snakemake-workflow
Posts with mentions or reviews of cookiecutter-snakemake-workflow.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Development notes in Snakemake workflows
I currently use cookiecutter to start new Snakemake repositories (projects) because it's really comfortable and guarantees that I follow an organized and recommended directory structure. However, I have a tendency to make notes during development. Maybe I made some decision based on something I learned in biostars or reddit and I want to remember that, or I start by outlining my workflow steps in written form. So far I've used both the README file and the Snakemake file (comments) to do that, but I'm wondering if anyone has a suggestion for how to fit development notes within a Snakemake project.
hecatomb
Posts with mentions or reviews of hecatomb.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Viral Metagenomics - assembly/annotation issues
Try this https://github.com/shandley/hecatomb
What are some alternatives?
When comparing cookiecutter-snakemake-workflow and hecatomb you can also consider the following projects:
cookiecutter-data-science - A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
sv-callers - Snakemake-based workflow for detecting structural variants in genomic data
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
FastAPI-template - Feature rich robust FastAPI template.
rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
cookiecutter-snakemake-workflow vs cookiecutter-data-science
hecatomb vs pypsa-eur
cookiecutter-snakemake-workflow vs pypsa-eur
hecatomb vs sv-callers
cookiecutter-snakemake-workflow vs metaGEM
hecatomb vs metaGEM
cookiecutter-snakemake-workflow vs FastAPI-template
hecatomb vs rna-seq-kallisto-sleuth