clusterProfiler Alternatives
Similar projects and alternatives to clusterProfiler based on common topics and language
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pathways2GO
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better clusterProfiler alternative or higher similarity.
clusterProfiler reviews and mentions
Posts with mentions or reviews of clusterProfiler.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-08-04.
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Visualizing gene ontology output
The Bioconductor package enrichplot has some nice functions for visualizing the results of clusterProfiler. See: https://yulab-smu.top/biomedical-knowledge-mining-book/
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Removing redundant terms in pathway enrichment analysis
See this GitHub issue on clusterprofiler: https://github.com/YuLab-SMU/clusterProfiler/issues/28
Stats
Basic clusterProfiler repo stats
2
942
7.8
27 days ago
The primary programming language of clusterProfiler is R.
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