Bracken_plot Alternatives
Similar projects and alternatives to bracken_plot
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flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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bracken_plot discussion
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- analysis of kraken2 reports
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Looking for some resources on creating a graph like this. Or the name of a graph like this so I can look up specific resources for R. :)
These are commonly called stacked bar plots or taxa relative abundance plots. You frequently see these plots in microbiome research papers where the authors performed either 16S or metagenomic sequencing. Given the type of data you have, you can use tools that are already available. Take a look at the R source code for this tool, which includes features like color palette recycling and grouping of taxa below a minimum abundance threshold into an “other” category.
Stats
Basic bracken_plot repo stats
2
7
5.9
10 months ago
acvill/bracken_plot is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of bracken_plot is R.
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