bracken_plot
A Shiny app for taxonomic abundance visualization (by acvill)
timevis
📅 Create interactive timeline visualizations in R (by daattali)
| bracken_plot | timevis | |
|---|---|---|
| 2 | 2 | |
| 7 | 673 | |
| - | 0.4% | |
| 5.9 | 2.1 | |
| 12 months ago | 8 months ago | |
| R | R | |
| MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bracken_plot
Posts with mentions or reviews of bracken_plot.
We have used some of these posts to build our list of alternatives
and similar projects.
- analysis of kraken2 reports
-
Looking for some resources on creating a graph like this. Or the name of a graph like this so I can look up specific resources for R. :)
These are commonly called stacked bar plots or taxa relative abundance plots. You frequently see these plots in microbiome research papers where the authors performed either 16S or metagenomic sequencing. Given the type of data you have, you can use tools that are already available. Take a look at the R source code for this tool, which includes features like color palette recycling and grouping of taxa below a minimum abundance threshold into an “other” category.
timevis
Posts with mentions or reviews of timevis.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-07-20.
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R Shiny Help
best way for any of this, is figure out smaller parts and combining them. https://shiny.rstudio.com/reference/shiny/0.14/fileInput.html - for the fileinput https://daattali.com/shiny/timevis-demo/ - for timevis.
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Examples of R packages which include a Shiny app?
timevis
What are some alternatives?
When comparing bracken_plot and timevis you can also consider the following projects:
electricShine - Create Standalone Installable Shiny Apps
covid19-event-risk-planner - COVID19 risk planner R-Shiny application
regexplain - 🔍 An RStudio addin slash regex utility belt
easystats - :milky_way: The R easystats-project
flextaxd - FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
targets-tutorial - Short course on the targets R package