What is the preferred way of documenting a Nextflow pipeline?

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

Our great sponsors
  • WorkOS - The modern identity platform for B2B SaaS
  • InfluxDB - Power Real-Time Data Analytics at Scale
  • SaaSHub - Software Alternatives and Reviews
  • rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  • Hi u/_Fallen_Azazel_, thank you for the answer. I took a look at their stuff but couldn't really find how they handle the documentation. For instance, `nf-core/rnaseq` is a model pipeline from the nf-core community, still, the documentation rendered on the nf-core website doesn't have any correlated markdown file at their repo (at least not that I could find). It is not clear for me how I should ideally do it.

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

    WorkOS logo
NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

Suggest a related project

Related posts