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Edit: Oh are you talking about the https://ficsave.xyz? That's the old website in which the developer explicitly stated on their twitter that they are no longer working on it. Instead, go to https://beta.ficsave.xyz which is their version 2.0 and it's in beta, but in my experience works well. The only issue that I have is that I have to download one fic at a time, but that's the price to pay for resolving the Cloudflare issue.
I use Calibre to manage my ebooks (not necessarily just fanfics) but it DOES also have an extension called "FanFicFare" that you can install that happily takes a list of URLs (or an AO3 or ffdotnet favs page) and pulls all fics listed on that page and auto downloads them as epub files. You can also tell it to grab cover art, and you can use it to check for updates of fics!
I use a combination of Calibre, FanFicFare and LinkGopher to download all the fanfiction I want.