Vcflib VS octopus

Compare Vcflib vs octopus and see what are their differences.

Vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings (by vcflib)
Biology variant-calling Genomics vcf-manipulation Genotyping Haplotypecaller
Source Code
github.com
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octopus

Bayesian haplotype-based mutation calling (by luntergroup)
Genomics variant-calling Bioinformatics Variants haplotypes somatic-variants de-novo-mutation phasing single-cell
Source Code
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Vcflib octopus
- 1
596 296
1.0% 0.3%
8.0 4.0
5 days ago 9 months ago
C++ C++
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

Vcflib

Posts with mentions or reviews of Vcflib. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning Vcflib yet.
Tracking mentions began in Dec 2020.

octopus

Posts with mentions or reviews of octopus. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing Vcflib and octopus you can also consider the following projects:

libsequence - libsequence: a C++ class library for evolutionary genetic analysis

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

SeqAn - SeqAn's official repository.

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

Wham - Structural variant detection and association testing

rare-disease-wf - (WIP) best-practices workflow for rare disease

cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data

hap.py - Haplotype VCF comparison tools

Vcflib vs libsequence octopus vs megahit Vcflib vs SeqAn octopus vs TileDB-VCF Vcflib vs Wham octopus vs rare-disease-wf Vcflib vs TileDB-VCF Vcflib vs cellSNP Vcflib vs hap.py