snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see (by snakemake)
tes-azure-legacy
[DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute (by microsoft)
| snakemake-wrappers | tes-azure-legacy | |
|---|---|---|
| 1 | 1 | |
| 205 | 18 | |
| 2.0% | - | |
| 9.9 | 10.0 | |
| 5 days ago | 8 months ago | |
| Python | Python | |
| - | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
snakemake-wrappers
Posts with mentions or reviews of snakemake-wrappers.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-07-15.
-
Snakemake – A framework for reproducible data analysis
1. Command-line tools are often used in steps of a bioinformatics pipeline, and they bridge the gap (e.g. https://github.com/snakemake/snakemake-wrappers).
tes-azure-legacy
Posts with mentions or reviews of tes-azure-legacy.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-07-15.
-
Snakemake – A framework for reproducible data analysis
Snakemake is a beautiful project and evolves and improves so fast. Years ago I realized I needed to up my game from the usual bash based NGS data processing pipelines I was writing. Based on several recommendation I choose Snakemake. I have never regretted it, It worked perfectly on our PBS cluster then on our Slurm cluster. I made some steps to make it run on K8s, which is supports, and most recently, I'm still/again happy with my choice for Snakemake because it (together with Nextflow) seems to be the chosen framework for GA4GH's cloud work stream's "products" like WES and TES [0]. This seems to be the tech stack where Amazon Omics and Microsoft Genomics focus on [1].
I owe a lot to Snakemake and Johannes Köster, I hope some day I can repay him and his project.
[0] https://www.ga4gh.org/work_stream/cloud/
[1] https://github.com/Microsoft/tes-azure
What are some alternatives?
When comparing snakemake-wrappers and tes-azure-legacy you can also consider the following projects:
mandala - A powerful and easy to use Python framework for experiment tracking and incremental computing
make-booster - Utility routines to simplify using GNU make and Python
oxen-release - Lightning fast data version control system for structured and unstructured machine learning datasets. We aim to make versioning datasets as easy as versioning code.