snakemake-wrappers VS make-booster

Compare snakemake-wrappers vs make-booster and see what are their differences.

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see (by snakemake)

make-booster

Utility routines to simplify using GNU make and Python (by david-a-wheeler)
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snakemake-wrappers make-booster
1 3
205 8
2.0% -
9.9 10.0
5 days ago over 1 year ago
Python Makefile
- MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

snakemake-wrappers

Posts with mentions or reviews of snakemake-wrappers. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-07-15.

make-booster

Posts with mentions or reviews of make-booster. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-07-15.
  • Snakemake – A framework for reproducible data analysis
    6 projects | news.ycombinator.com | 15 Jul 2023
    For a very different approach, check out make-booster:

    https://github.com/david-a-wheeler/make-booster

    Make-booster provides utility routines intended to greatly simplify data processing (particularly a data pipeline) using GNU make. It includes some mechanisms specifically to help Python, as well as general-purpose mechanisms that can be useful in any system. In particular, it helps reliably reproduce results, and it automatically determines what needs to run and runs only that (producing a significant speedup in most cases). Released as open source software.

  • A Love Letter to Make
    5 projects | news.ycombinator.com | 20 Apr 2023
    https://github.com/david-a-wheeler/make-booster

    I think a lot of hate on make is due to poor use. If your makefile is complex, refactor it. Auto-generate dependencies (it only takes a few lines in GNU make). And don't use recursive make, that way lies madness. I also think GNU make is the wiser tool; POSIX make lacks too much in many cases.

  • The Unreasonable Effectiveness of Makefiles
    12 projects | news.ycombinator.com | 12 Aug 2022
    https://github.com/david-a-wheeler/make-booster

    From its readme:

    "This project (contained in this directory and below) provides utility routines intended to greatly simplify data processing (particularly a data pipeline) using GNU make. It includes some mechanisms specifically to help Python, as well as general-purpose mechanisms that can be useful in any system. In particular, it helps reliably reproduce results, and it automatically determines what needs to run and runs only that (producing a significant speedup in most cases)."

    "For example, imagine that Python file BBB.py says include CC, and file CC.py reads from file F.txt (and CC.py declares its INPUTS= as described below). Now if you modify file F.txt or CC.py, any rule that runs BBB.py will automatically be re-run in the correct order when you use make, even if you didn't directly edit BBB.py."

    This is NOT functionality directly provided by Python, and the overhead with >1000 files was 0.07seconds which we could live with :-).

What are some alternatives?

When comparing snakemake-wrappers and make-booster you can also consider the following projects:

mandala - A powerful and easy to use Python framework for experiment tracking and incremental computing

tclmake - Partial make clone in pure Tcl

tes-azure-legacy - [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute

checkexec - CLI tool to conditionally execute commands only when files in a dependency list have been updated. Like `make`, but standalone.

oxen-release - Lightning fast data version control system for structured and unstructured machine learning datasets. We aim to make versioning datasets as easy as versioning code.

dagger - Application Delivery as Code that Runs Anywhere

just - 🤖 Just a command runner

handlebars.c - C implementation of handlebars.js

bake - A Bash-based Make alternative.