single-cell-transcriptomics-app VS clustifyr

Compare single-cell-transcriptomics-app vs clustifyr and see what are their differences.

single-cell-transcriptomics-app

A R Shiny App for single-cell analysis (by poloarol)
rshiny rshiny-application single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-omics single-cell-rna-seq
Source Code
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clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets (by rnabioco)
rna-seq Clusters marker-genes assign-identities single-cell-rna-seq
Source Code
rnabioco.github.io
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single-cell-transcriptomics-app clustifyr
1 1
0 101
- 0.0%
3.1 4.9
7 months ago 10 days ago
R R
MIT License MIT License
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single-cell-transcriptomics-app

Posts with mentions or reviews of single-cell-transcriptomics-app. We have used some of these posts to build our list of alternatives and similar projects.

clustifyr

Posts with mentions or reviews of clustifyr. We have used some of these posts to build our list of alternatives and similar projects.
  • Compare specific clusters across condition in scRNA-seq
    1 project | /r/bioinformatics | 16 Sep 2022
    You can use the package clustifyr in r with seurat and use a known data set that has already been identified. It will give you a correlation matrix to define how close your “unknown” cluster is to a already identified cluster. However this all depends on if you have a good reference data set clustifyr

What are some alternatives?

When comparing single-cell-transcriptomics-app and clustifyr you can also consider the following projects:

rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data

clustifyr vs rna-seq-kallisto-sleuth clustifyr vs bambu