SeqAn VS seqan3

Compare SeqAn vs seqan3 and see what are their differences.

SeqAn

SeqAn's official repository. (by seqan)
Biology Cpp14 Bioinfomatics High Performance Simd sequence-alignments Alignment Bwt Indexing Suffixarray Htslib sam-bam Fasta fastq-format Blast Seqan
Source Code
seqan.de
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seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs. (by seqan)
sequence-analysis Seqan Cpp17 Cpp20 cpp-concepts Bioinformatics Blast sequence-alignment Fasta fastq Samtools fm-index Modern
Source Code
seqan.de
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SeqAn seqan3
- 1
457 388
2.0% 2.1%
7.3 8.9
17 days ago about 2 months ago
C++ C++
GNU General Public License v3.0 or later GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

SeqAn

Posts with mentions or reviews of SeqAn. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning SeqAn yet.
Tracking mentions began in Dec 2020.

seqan3

Posts with mentions or reviews of seqan3. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-26.
  • Hardcore metaprogramming in the wild
    17 projects | /r/cpp | 26 Oct 2021
    The SeqAn bioinformatics algorithms library includes quite advanced TMP. SeqAn basically provides an object oriented library of algorithms, but with compile-time (rather than runtime) dispatch. In other words, it implements compile-time OOP.

What are some alternatives?

When comparing SeqAn and seqan3 you can also consider the following projects:

Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

vif - Easy, robust, and fast numerics in C++.

libsequence - libsequence: a C++ class library for evolutionary genetic analysis

json_struct - json_struct is a single header only C++ library for parsing JSON directly to C++ structs and vice versa

Wham - Structural variant detection and association testing

eventpp - Event Dispatcher and callback list for C++

kanzi-cpp - Fast lossless data compression in C++

cpp-sort - Sorting algorithms & related tools for C++14

sdsl-lite - Succinct Data Structure Library 3.0

tight_pair - A compressed pair for C++17

fstalign - An efficient OpenFST-based tool for calculating WER and aligning two transcript sequences.

diamond - Accelerated BLAST compatible local sequence aligner.

SeqAn vs Vcflib seqan3 vs vif SeqAn vs libsequence seqan3 vs json_struct SeqAn vs Wham seqan3 vs eventpp SeqAn vs kanzi-cpp seqan3 vs cpp-sort SeqAn vs sdsl-lite seqan3 vs tight_pair SeqAn vs fstalign seqan3 vs diamond