ruby-htslib VS cyvcf2

Compare ruby-htslib vs cyvcf2 and see what are their differences.

ruby-htslib

HTSlib bindings for Ruby (by kojix2)
Htslib Bioinformatics Ruby bam Sam Genomics Bcf
Source Code
kojix2.github.io
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cyvcf2

cython + htslib == fast VCF and BCF processing (by brentp)
Vcf Htslib Cython Genomics Bioinformatics
Source Code
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ruby-htslib cyvcf2
1 1
8 357
- -
7.4 7.7
3 months ago 2 months ago
Ruby Cython
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

ruby-htslib

Posts with mentions or reviews of ruby-htslib. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-07-26.
  • ffi-bitfield
    4 projects | dev.to | 26 Jul 2021
    I'm working on a bioinformatics-related binding called ruby-htslib. htslib makes heavy use of bit fields throughout the library, so supporting bit fields is inevitable.

cyvcf2

Posts with mentions or reviews of cyvcf2. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing ruby-htslib and cyvcf2 you can also consider the following projects:

ffi - Ruby FFI

pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

ffi-bitfield - Bit field for Ruby-FFI

htslib - C library for high-throughput sequencing data formats

sambamba - Tools for working with SAM/BAM data

chatnoir-resiliparse - A robust web archive analytics toolkit

truvari - Structural variant toolkit for VCFs

hts.cr - HTSlib bindings for Crystal

Hail - Cloud-native genomic dataframes and batch computing

bam-filter - Use simple expressions to filter a BAM/CRAM file

ruby-htslib vs ffi cyvcf2 vs pyrodigal ruby-htslib vs ffi-bitfield cyvcf2 vs htslib ruby-htslib vs sambamba cyvcf2 vs chatnoir-resiliparse cyvcf2 vs truvari cyvcf2 vs hts.cr cyvcf2 vs Hail cyvcf2 vs bam-filter