rna-seq-kallisto-sleuth
hecatomb
rna-seq-kallisto-sleuth | hecatomb | |
---|---|---|
1 | 1 | |
63 | 41 | |
- | - | |
5.9 | 8.5 | |
20 days ago | about 2 months ago | |
Python | Python | |
MIT License | MIT License |
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rna-seq-kallisto-sleuth
-
qiime2 but for RNAseq data?
(repo is here: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth)
hecatomb
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Viral Metagenomics - assembly/annotation issues
Try this https://github.com/shandley/hecatomb
What are some alternatives?
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
sv-callers - Snakemake-based workflow for detecting structural variants in genomic data
drake - An R-focused pipeline toolkit for reproducibility and high-performance computing
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
biomisc_R - command line bioinformatic scripts written in R
cookiecutter-snakemake-workflow - A cookiecutter template for Snakemake workflows
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
targets - Function-oriented Make-like declarative workflows for R
wiggleplotr - A small R package to make sequencing read coverage plots in R.