rhmmer VS Baltica

Compare rhmmer vs Baltica and see what are their differences.

rhmmer

Simple R utilities for working with HMMER (by arendsee)
hmmer Bioinformatics
Source Code
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Baltica

Baltica: integrated differential junction usage (by dieterich-lab)
Bioinformatics bioinformatics-pipeline alternative-splicing Workflows data-integration
Source Code
dieterich-lab.github.io
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rhmmer Baltica
1 1
14 7
- -
0.0 2.6
over 1 year ago about 1 year ago
R R
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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rhmmer

Posts with mentions or reviews of rhmmer. We have used some of these posts to build our list of alternatives and similar projects.

Baltica

Posts with mentions or reviews of Baltica. We have used some of these posts to build our list of alternatives and similar projects.
  • Novel Splice Variants in RNAseq Data
    1 project | /r/bioinformatics | 15 Sep 2021
    Also, we've been working on a framework with multiple workflows for differential splicing: Baltica: integrated differential junction usage (DJU) https://github.com/dieterich-lab/Baltica . Please have on mind that Baltica is work in progress, but the workflows are quite mature. Fell free to contact me if you have any questions!

What are some alternatives?

When comparing rhmmer and Baltica you can also consider the following projects:

heatitup

awesome-single-cell - Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

biomisc_R - command line bioinformatic scripts written in R

drugfindR - Repository holding the code for the drugfindR R package

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

ermineR - R wrapper for ermineJ

bio-sequence

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

rhmmer vs heatitup Baltica vs awesome-single-cell rhmmer vs biomisc_R Baltica vs drugfindR rhmmer vs maftools Baltica vs ermineR rhmmer vs ermineR rhmmer vs bio-sequence rhmmer vs rBLAST