rare-disease-wf VS rnaseq-nf

Compare rare-disease-wf vs rnaseq-nf and see what are their differences.

rare-disease-wf

(WIP) best-practices workflow for rare disease (by brentp)
Variants rare-disease Genomics
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rnaseq-nf

A proof of concept of RNAseq pipeline (by nextflow-io)
nextflow rnaseq Genomics
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rare-disease-wf rnaseq-nf
1 1
56 62
- -
0.0 5.8
about 1 year ago 17 days ago
Nextflow Nextflow
MIT License Mozilla Public License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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rare-disease-wf

Posts with mentions or reviews of rare-disease-wf. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-06.
  • Ask HN: How to be my own genetic disease researcher for my partner?
    4 projects | news.ycombinator.com | 6 Dec 2021
    Feel free to reach out, username at berkeley edu.

    In open source bioinformatics we strive for reproducible science, which can be difficult in a field with tons of different methods and tools. One approach is to use a workflow language such as Nextflow [0] and Docker/Singularity such that the entire analysis is reproducible, see e.g. [1].

    There is a vibrant community around Nextflow workflows called nf-core [2] which has a rare disease workflow in development [3], come join our slack!

    [0] - https://nextflow.io

    [1] - https://github.com/brentp/rare-disease-wf

    [2] - https://nf-co.re

    [3] - https://nf-co.re/raredisease

rnaseq-nf

Posts with mentions or reviews of rnaseq-nf. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing rare-disease-wf and rnaseq-nf you can also consider the following projects:

slivar - genetic variant expressions, annotation, and filtering for great good.

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

gnomad-browser - Explore gnomAD datasets on the web

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

octopus - Bayesian haplotype-based mutation calling

patterns - A curated collection of Nextflow implementation patterns

Exomiser - A Tool to Annotate and Prioritize Exome Variants

hlatyping - Precision HLA typing from next-generation sequencing data

rare-disease-wf vs slivar rnaseq-nf vs sarek rare-disease-wf vs sarek rnaseq-nf vs rnatoy rare-disease-wf vs gnomad-browser rnaseq-nf vs rnaseq rare-disease-wf vs octopus rnaseq-nf vs patterns rare-disease-wf vs Exomiser rare-disease-wf vs hlatyping