pyrodigal
masurca
| pyrodigal | masurca | |
|---|---|---|
| 1 | 1 | |
| 122 | 230 | |
| - | - | |
| 8.7 | 3.5 | |
| 9 days ago | 3 months ago | |
| Cython | M4 | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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pyrodigal
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DNA to amino acid sequence?
True! I believe bakta relies on this python implementation of prodigal for translation https://github.com/althonos/pyrodigal
masurca
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Nanopore long read assembly help!
Hybrid assembly: https://github.com/alekseyzimin/masurca
What are some alternatives?
Prodigal - Prodigal Gene Prediction Software
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
cyvcf2 - cython + htslib == fast VCF and BCF processing
bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization
MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.
mag - Assembly and binning of metagenomes
orfipy - Fast and flexible ORF finder
Trycycler - A tool for generating consensus long-read assemblies for bacterial genomes
DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.
aviary - A hybrid assembly and MAG recovery pipeline (and more!)
pybase64 - Fast Base64 encoding/decoding in Python
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline