pyrodigal
Prodigal
pyrodigal | Prodigal | |
---|---|---|
1 | 4 | |
122 | 410 | |
- | - | |
8.7 | 0.0 | |
2 days ago | 4 months ago | |
Cython | C | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyrodigal
-
DNA to amino acid sequence?
True! I believe bakta relies on this python implementation of prodigal for translation https://github.com/althonos/pyrodigal
Prodigal
-
DNA to amino acid sequence?
use prodigal https://github.com/hyattpd/prodigal
- Trying to Install Prodigal from GitHub
-
ORF prediction for non-model organism with DNA sequence only
I'd use prodigial and not their ugly closed source software...
-
How do I convert a scaffold into genes?
Prodigal is a commonly used gene-caller for prokaryotic genomes. In fact, I believe it is used by Prokka, as mentioned by another commenter.
What are some alternatives?
cyvcf2 - cython + htslib == fast VCF and BCF processing
prokka - :zap: :aquarius: Rapid prokaryotic genome annotation
MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.
BRAKER - BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
orfipy - Fast and flexible ORF finder
DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.
DNA-to-Amino-Acid-Converter - This program breaks apart a DNA string and dispalys each amino acid associated with each codon
pybase64 - Fast Base64 encoding/decoding in Python
masurca