ORF prediction for non-model organism with DNA sequence only

• prokka

  5 754 0.0 Perl

  :zap: :aquarius: Rapid prokaryotic genome annotation

I just checked out Prokka, which uses Prodigal to predict genes. They do not seem to have any reservations for viruses. Thus, I recommend using Prokka directly, since that will conveniently add functional annotations.

• Prodigal

  4 404 0.0 C

  Prodigal Gene Prediction Software

I'd use prodigial and not their ugly closed source software...

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• BRAKER

  2 319 8.7 Perl

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  

BRAEKR2 (include GeneMark + AUGUSTUS, can take RNA-seq and OrthoDB in consideration)

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