pypop VS ngsLD

Compare pypop vs ngsLD and see what are their differences.

pypop

PyPop: Python for Population Genomics (by alexlancaster)
population-genomics evolutionary-biology Bioinformatics open-source free-software
Source Code
pypop.org
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ngsLD

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework (by fgvieira)
ld genotype-likelihoods population-genomics ngs
Source Code
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pypop ngsLD
1 1
19 37
- -
9.4 4.9
13 days ago 6 months ago
Python C++
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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pypop

Posts with mentions or reviews of pypop. We have used some of these posts to build our list of alternatives and similar projects.

ngsLD

Posts with mentions or reviews of ngsLD. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-09-19.
  • angsd file conversion + subsetting help?
    2 projects | /r/bioinformatics | 19 Sep 2022
    However, I realised I needed to go back and run NGSrelate on my samples (oops). This requires DoGlf 3, which according to the documentation, and this link, is a binary beagle file. I was in the process of rerunning angsd when my CPU hours ran out on the server, and it crashed (lets call this angsd run 2). It has however finished 4 days worth of analyses that I don't want to have to rerun.

What are some alternatives?

When comparing pypop and ngsLD you can also consider the following projects:

TheHiveDocs - Documentation of TheHive

glactools - command-line tools for the management of genotype likelihoods and allele counts

alphapept - A modular, python-based framework for mass spectrometry. Powered by nbdev.

TPMCalculator - TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

smd - Spotify Music Downloader

NgsRelate

uncurled - Uncurled - everything I know and learned about running and maintaining Open Source projects for three decades.

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

TheHive4py - Python API Client for TheHive

chaotix - The chaotix operating system! (Previously known as Magma or Psychix)

eiten - Statistical and Algorithmic Investing Strategies for Everyone

ytmdl - A simple app to get songs from YouTube in mp3 format with artist name, album name etc from sources like iTunes, Spotify, LastFM, Deezer, Gaana etc.

pypop vs TheHiveDocs ngsLD vs glactools pypop vs alphapept ngsLD vs TPMCalculator pypop vs smd ngsLD vs NgsRelate pypop vs uncurled ngsLD vs fastp pypop vs TheHive4py ngsLD vs chaotix pypop vs eiten pypop vs ytmdl