protein-bert-pytorch
Implementation of ProteinBERT in Pytorch (by lucidrains)
tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (by songlab-cal)
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| protein-bert-pytorch | tape | |
|---|---|---|
| 2 | 1 | |
| 65 | 447 | |
| - | 5.1% | |
| 1.3 | 2.3 | |
| 11 months ago | 10 months ago | |
| Python | Python | |
| MIT License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
protein-bert-pytorch
Posts with mentions or reviews of protein-bert-pytorch.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-02-08.
tape
Posts with mentions or reviews of tape.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-05-30.
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ProteinBERT: A universal deep-learning model of protein sequence and function
We evaluated based on downstream tasks (multiple supervised benchmarks, including 4 from TAPE), not the LM performance.
What are some alternatives?
When comparing protein-bert-pytorch and tape you can also consider the following projects:
DETReg - Official implementation of the CVPR 2022 paper "DETReg: Unsupervised Pretraining with Region Priors for Object Detection".
student-teacher-anomaly-detection - Student–Teacher Anomaly Detection with Discriminative Latent Embeddings
pyod - A Comprehensive and Scalable Python Library for Outlier Detection (Anomaly Detection)
fashion-mnist - A MNIST-like fashion product database. Benchmark :point_down:
text - Data loaders and abstractions for text and NLP
provis - Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."