pathml
DataProfiler
pathml | DataProfiler | |
---|---|---|
2 | 61 | |
364 | 1,365 | |
3.0% | 1.2% | |
8.0 | 6.3 | |
about 1 month ago | 8 days ago | |
Python | Python | |
GNU General Public License v3.0 only | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pathml
- Hilo Semanal de Consultas IT - Asesoría Técnica, Desarrollo Profesional y Aprendizaje
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Dask – a flexible library for parallel computing in Python
We have been using dask to support our computational pathology workflows [1], where the images are so big that they cannot be loaded in memory, let alone analyzed (standard pathology whole slide images are ~1GB; some microscopy techniques generate images >1TB). We divide each image into a bunch of smaller tiles and process each tile independently. The dask.distributed scheduler lets us scale up by distributing the tile processing across a cluster.
Benefits of dask.distributed: easy to get up and running, and has support for spinning up clusters on lots of different computing platforms (local machines, HPC cluster, k8s, etc.)
One difficulty is optimizing performance - there are so many configuration details (job size, number of workers, worker resources, etc. etc.) that it's been hard to know what is best.
[1] https://github.com/Dana-Farber-AIOS/pathml
DataProfiler
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LongRoPE: Extending LLM Context Window Beyond 2M Tokens
It's been possible to skip tokenization for a long time, my team and I did it here - https://github.com/capitalone/DataProfiler
For what it's worth, we actually were working with LSTMs with nearly a billion params back in 2016-2017 area. Transformers made it far more effective to train and execute, but ultimately LSTMs are able to achieve similar results, though slow & require more training data.
- Data Profiler – What's in your data?
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Data Profiler 0.9.0 -- offering a massive improvement to memory usage during profiling of large datasets
Great call out -- would you be willing to write up an issue for that on the repo? Thank you! https://github.com/capitalone/DataProfiler/issues/new/choose
- FLiPN-FLaNK Stack Weekly for 20 March 2023
- Release 0.8.3 · capitalone/DataProfiler
What are some alternatives?
mpire - A Python package for easy multiprocessing, but faster than multiprocessing
ydata-profiling - 1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.
slideflow - Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
pyWhat - 🐸 Identify anything. pyWhat easily lets you identify emails, IP addresses, and more. Feed it a .pcap file or some text and it'll tell you what it is! 🧙♀️
Keras - Deep Learning for humans
usaddress - :us: a python library for parsing unstructured United States address strings into address components
pytorch-ssim - pytorch structural similarity (SSIM) loss
XlsxWriter - A Python module for creating Excel XLSX files.
cudf - cuDF - GPU DataFrame Library
superset - Apache Superset is a Data Visualization and Data Exploration Platform
legate.pandas - An Aspiring Drop-In Replacement for Pandas at Scale
vtuber-livechat-dataset - 📊 VTuber 1B: Billion-scale Live Chat and Moderation Event Dataset