Python pathology

Open-source Python projects categorized as pathology
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Topics: histopathology Deep Learning computational-pathology Python Machine Learning
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Top 3 Python pathology Projects

  • pathml

    Tools for computational pathology

    • Project mention: Hilo Semanal de Consultas IT - Asesoría Técnica, Desarrollo Profesional y Aprendizaje | /r/chileIT | 2023-06-28

  • slideflow

    Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

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  • SISH

    Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering (by mahmoodlab)

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python pathology related posts

  • Hilo Semanal de Consultas IT - Asesoría Técnica, Desarrollo Profesional y Aprendizaje

    1 project | /r/chileIT | 28 Jun 2023

  • [R] [P] Slideflow 2.0: End-to-end digital pathology toolkit with RPi-compatible deployment

    2 projects | /r/MachineLearning | 12 Apr 2023

  • Suggestions for a socially valuable project that would welcome an unpaid contributor [D]

    1 project | /r/MachineLearning | 21 Nov 2022

  • [R] [P] Slideflow: a deep learning framework for digital histology

    2 projects | /r/MachineLearning | 18 Apr 2022

Index

What are some of the best open-source pathology projects in Python? This list will help you:

Project Stars
1 pathml 364
2 slideflow 219
3 SISH 89

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