orthologr VS ermineR

Compare orthologr vs ermineR and see what are their differences.

orthologr

Genome wide orthology inference and dNdS estimation (by drostlab)
blast-searches orthology-inference comparative-genomics-studies Genomics sequence-alignments Blast comparative dnds-estimation codon-alignment R entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Source Code
drostlab.github.io
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ermineR

R wrapper for ermineJ (by PavlidisLab)
ogan-bio gene-sets Bioinformatics Genomics Biology enrichment-analysis
Source Code
pavlidislab.github.io
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orthologr ermineR
1 1
82 6
- -
7.3 0.0
7 months ago over 1 year ago
R R
GNU General Public License v3.0 only GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

orthologr

Posts with mentions or reviews of orthologr. We have used some of these posts to build our list of alternatives and similar projects.

ermineR

Posts with mentions or reviews of ermineR. We have used some of these posts to build our list of alternatives and similar projects.
  • Gene ontology of differentially expressed genes in R
    1 project | /r/bioinformatics | 4 Aug 2021
    I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link

What are some alternatives?

When comparing orthologr and ermineR you can also consider the following projects:

gggenomes - A grammar of graphics for comparative genomics

full_spectrum_bioinformatics - An open-access bioinformatics text

awesome-R - A curated list of awesome R packages, frameworks and software.

Baltica - Baltica: integrated differential junction usage

ggplot2 - An implementation of the Grammar of Graphics in R

rhmmer - Simple R utilities for working with HMMER

orthologr vs gggenomes ermineR vs full_spectrum_bioinformatics orthologr vs awesome-R ermineR vs Baltica orthologr vs ggplot2 ermineR vs rhmmer