org-roam-bibtex
pdf-tools
org-roam-bibtex | pdf-tools | |
---|---|---|
10 | 32 | |
561 | 1,586 | |
0.9% | - | |
3.1 | 0.0 | |
2 months ago | over 1 year ago | |
Emacs Lisp | C | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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org-roam-bibtex
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Emacs and knowledge management for scientists
In addition to org-roam, I would recommend checking out https://github.com/org-roam/org-roam-bibtex for attaching notes to specific papers that are indexed by an application like Zotero. Some good tutorials for it are here: https://rgoswami.me/posts/org-note-workflow/ and https://blog.jethro.dev/posts/how_to_take_smart_notes_org/ and https://emacsconf.org/2020/talks/17/ . Since current org-roam (post-v2) uses the normal org-mode "id" form, you can make any "headline" into an roam-registered node. You could then split your long derivations into different headlines, where the body of the headline or descriptive text could refer to prior nodes, but any latex is inserted using org latex blocks https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.html . You've maybe already considered this (and I wouldn't be surprised if local references were easier to do in straight latex), but org-roam-bibtex is really nice for interfacing with your citation system for other papers.
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Starting my PhD and keeping my lab notebook in org-mode!
I think you should also look org-roam and org-roam-bibtex (I can't configure org-roam-bibtex properly because I'm on Windows).
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Write research paper notes/summaries in emacs
Taking this one step further, if you use the excellent org-roam package (which if you don't you should definitely check it out, its great for note-taking), there is a package called org-roam-bibtex which communicates very well with the aforementioned packages. With it, you can create bibliographic notes as part of your org-roam repository from their bibtex entry and initialize the file to also include a link to the pdf from org-noter. Once you learn it, its a very powerful and streamlined workflow for working with articles which makes your life very easy. Its quite a bit of reading to do on your end on how to make all these work together, but trust me its worth it.
- Org-roam-bibtex: Org Roam integration with bibliography management software
- Help with getting Work Flow Right
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Errors when creating new node
Have you followed the discussion here: https://github.com/org-roam/org-roam-bibtex/issues/159
- Reminder: org-roam and org-roam-bibtex will be upgraded to V2 the next Friday or Saturday (depending of your time zone). This upgrade is incompatible with the current configurations. Don't forget to upgrade yours.
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Question about the org-roam redesign
If you want to use it primarily for literature notes, maybe you should have a look at the current state of https://github.com/org-roam/org-roam-bibtex/tree/org-roam-v2 before deciding.
- Easy Annotated Bibliographies with org-roam-bibtex?
pdf-tools
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(re)build epdfinfo progam fails because poppler-private headers not found
Also https://github.com/politza/pdf-tools/issues/706
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Do all Emacs versions have blurry pdfs in pdf-tools on M1 Macbooks?
;; Fix blurry PDFs on MacOS. ;; From https://github.com/politza/pdf-tools/issues/51 (setq pdf-view-use-scaling t)
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Write research paper notes/summaries in emacs
First things first, install pdf-tools, a great Emacs package for viewing pdfs. The default pdf viewer Docview is very limited so you should definitely get this package.
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What different before you were using emacs?
nov.el is pretty nice, although pdf-tools makes PDFs tolerable.
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pdf-tools got a new maintainer!
It looks enjoy pdf-tools got a new maintainer and he already changed the the melpa ⠀recipe, so you can get it via the package manager. I think this is a good development. My impression is, that he is new as an Emacs package maintainer, so please be kind and supportive, so he will stay on it for a while. :)
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Okular – The Universal Document Viewer
I have been using emacs pdf-tools lately and really enjoying it https://github.com/politza/pdf-tools
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PDF Note Style UI/UX in Remnote
View, annotate PDFs and more with Emac's pdf-tools. There is also the built-in doc-view.
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Cut and Paste from a PDF in Emacs
[pdf-tools](https://github.com/politza/pdf-tools) will let you do that.
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(global-linum-mode 1) causing issues with pdf viewing
I tried setting (add-hook 'pdf-view-mode-hook (lambda() (linum-mode -1))), which I found here. But it doesn't seem to do anything.
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Disable embedded code execution in pdfs?
doc-view.el aside, there's https://github.com/politza/pdf-tools which may have its own set of issues.
What are some alternatives?
doom-emacs-config - Doom Emacs configuration finely tuned for "distraction-free' academic writing
HomeBrew - 🍺 The missing package manager for macOS (or Linux)
helm-bibtex - Search and manage bibliographies in Emacs
dot-doom - My Doom Emacs config files. Mirrored from https://gitlab.com/zzamboni/dot-doom
md-roam - Use Org-roam with markdown files by adding Md-roam as a plug-in. Mix org and markdown files in a single Org-roam database.
org-noter - Emacs document annotator, using Org-mode
Zero-to-Emacs-and-Org-roam - Step by step guide from zero to installing and setting up Emacs and Org-roam on Windows 10
org-roam - Rudimentary Roam replica with Org-mode
citar - Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.
build-emacs-for-macos - Somewhat hacky script to automate building of Emac.app on macOS.
citeproc-el - A CSL 1.0.2 Citation Processor for Emacs.