org-roam-bibtex
helm-bibtex
org-roam-bibtex | helm-bibtex | |
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10 | 8 | |
561 | 455 | |
0.9% | - | |
3.1 | 5.4 | |
2 months ago | 2 months ago | |
Emacs Lisp | Emacs Lisp | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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org-roam-bibtex
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Emacs and knowledge management for scientists
In addition to org-roam, I would recommend checking out https://github.com/org-roam/org-roam-bibtex for attaching notes to specific papers that are indexed by an application like Zotero. Some good tutorials for it are here: https://rgoswami.me/posts/org-note-workflow/ and https://blog.jethro.dev/posts/how_to_take_smart_notes_org/ and https://emacsconf.org/2020/talks/17/ . Since current org-roam (post-v2) uses the normal org-mode "id" form, you can make any "headline" into an roam-registered node. You could then split your long derivations into different headlines, where the body of the headline or descriptive text could refer to prior nodes, but any latex is inserted using org latex blocks https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.html . You've maybe already considered this (and I wouldn't be surprised if local references were easier to do in straight latex), but org-roam-bibtex is really nice for interfacing with your citation system for other papers.
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Starting my PhD and keeping my lab notebook in org-mode!
I think you should also look org-roam and org-roam-bibtex (I can't configure org-roam-bibtex properly because I'm on Windows).
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Write research paper notes/summaries in emacs
Taking this one step further, if you use the excellent org-roam package (which if you don't you should definitely check it out, its great for note-taking), there is a package called org-roam-bibtex which communicates very well with the aforementioned packages. With it, you can create bibliographic notes as part of your org-roam repository from their bibtex entry and initialize the file to also include a link to the pdf from org-noter. Once you learn it, its a very powerful and streamlined workflow for working with articles which makes your life very easy. Its quite a bit of reading to do on your end on how to make all these work together, but trust me its worth it.
- Org-roam-bibtex: Org Roam integration with bibliography management software
- Help with getting Work Flow Right
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Errors when creating new node
Have you followed the discussion here: https://github.com/org-roam/org-roam-bibtex/issues/159
- Reminder: org-roam and org-roam-bibtex will be upgraded to V2 the next Friday or Saturday (depending of your time zone). This upgrade is incompatible with the current configurations. Don't forget to upgrade yours.
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Question about the org-roam redesign
If you want to use it primarily for literature notes, maybe you should have a look at the current state of https://github.com/org-roam/org-roam-bibtex/tree/org-roam-v2 before deciding.
- Easy Annotated Bibliographies with org-roam-bibtex?
helm-bibtex
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Write research paper notes/summaries in emacs
This on its own is a great system for writing such notes. However, it is very lacking in searchability. If you want the notes, you need to go find them. To solve this, you first need a package to manage your bibliography in Emacs. These function with a .bib file that I assume you already can obtain through Mendeley. To my knowledge, there are two great packages for this, citar and bibtex-completion (which is actually two packages ivy-bibtex and helm-bibtex). Depending on the completion framework you are using (Ivy, Helm or Vertico/Selectrum) you can use one of these. These packages read from a bibliography file and make your life so much easier in finding the research paper you are looking for. They also have another neat feature. They allow you to create notes for your bibtex entries with ready customisable templates. This makes this whole process so much easier as you can find a paper you want to read, create a note for it with one of these packages and then link it to its pdf with org-noter. This way you have a fully-fledged research workflow inside Emacs.
- Helm-bibtex: Search and manage bibliographies in Emacs
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org-ref/bibtex-completion/ivy-bibtex entries are not displayed if keyphrases do not fall into the display field
I have a question regarding org-ref, bibtex-completion and ivy-bibtex respectively. I have org-ref set up as suggested by John Kitchin on his github page. This is some of the relevant code, i guess.
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New package consult-bibtex
no multiple selection (ivy has it, but not ivy-bibtex, see https://github.com/tmalsburg/helm-bibtex/issues/308)
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Consult equivalent for ivy-bibtex?
There is already a completing-read implementation of helm-bibtex/ivy-bibtex in the works which is supposed to be used with Selectrum/Icomplete/Consult etc. See https://github.com/tmalsburg/helm-bibtex/pull/361 and https://github.com/tmalsburg/helm-bibtex/pull/355. Maybe you can collaborate with /u/bdarcus?
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completing-read: displaying using one string, but searching on another?
This got me pointed in the right direction. I just need to now write the helper function to grab that extended metadata.
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Long-Time Emacs User Looking to Level-Up (note-taking for classes)
I also second the suggestion of another poster on counsel, swiper, ivy, etc. (I love this suite and the various add-ons). I'd add ivy-bibtex.
What are some alternatives?
doom-emacs-config - Doom Emacs configuration finely tuned for "distraction-free' academic writing
citar - Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.
md-roam - Use Org-roam with markdown files by adding Md-roam as a plug-in. Mix org and markdown files in a single Org-roam database.
org-ref - org-mode modules for citations, cross-references, bibliographies in org-mode and useful bibtex tools to go with it.
Zero-to-Emacs-and-Org-roam - Step by step guide from zero to installing and setting up Emacs and Org-roam on Windows 10
pdf-tools - Emacs support library for PDF files.
org-noter - Emacs document annotator, using Org-mode
citeproc-el - A CSL 1.0.2 Citation Processor for Emacs.
vulpea - A collection of functions for note taking based on `org` and `org-roam`.
dot-doom - My Doom Emacs config files. Mirrored from https://gitlab.com/zzamboni/dot-doom