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Try mupdf [1], it allows the selection of any rectangular shape. Use the "right" mouse button to select an area, the text contents of which are copied to the primary selection from where they can be pasted using the "middle" mouse button.
apt install mupdf on Debian, your distribution may vary.
I have been using emacs pdf-tools lately and really enjoying it https://github.com/politza/pdf-tools
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.