masurca VS pyrodigal

Compare masurca vs pyrodigal and see what are their differences.

masurca

By alekseyzimin
masurca Genome Assembly Bioinformatics
Source Code
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pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! (by althonos)
orf-finder metagenomes Python bioconda python-library cython-wrapper python-interface prodigal Genome gene-finding Bioinformatics Simd
Source Code
pyrodigal.readthedocs.org
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masurca pyrodigal
1 1
229 122
- -
3.5 8.7
2 months ago 17 days ago
M4 Cython
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

masurca

Posts with mentions or reviews of masurca. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-05-10.

pyrodigal

Posts with mentions or reviews of pyrodigal. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-19.

What are some alternatives?

When comparing masurca and pyrodigal you can also consider the following projects:

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Prodigal - Prodigal Gene Prediction Software

bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization

cyvcf2 - cython + htslib == fast VCF and BCF processing

mag - Assembly and binning of metagenomes

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

Trycycler - A tool for generating consensus long-read assemblies for bacterial genomes

orfipy - Fast and flexible ORF finder

aviary - A hybrid assembly and MAG recovery pipeline (and more!)

DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

pybase64 - Fast Base64 encoding/decoding in Python

masurca vs deepvariant pyrodigal vs Prodigal masurca vs bioinformatics pyrodigal vs cyvcf2 masurca vs mag pyrodigal vs MultiQC masurca vs Trycycler pyrodigal vs orfipy masurca vs aviary pyrodigal vs DNA-to-Protein-sequence masurca vs eager pyrodigal vs pybase64