octopus VS Vcflib

Compare octopus vs Vcflib and see what are their differences.

octopus

Bayesian haplotype-based mutation calling (by luntergroup)
Genomics variant-calling Bioinformatics Variants haplotypes somatic-variants de-novo-mutation phasing single-cell
Source Code
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Vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings (by vcflib)
Biology variant-calling Genomics vcf-manipulation Genotyping Haplotypecaller
Source Code
github.com
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octopus Vcflib
1 -
296 596
0.3% 1.2%
4.0 8.0
9 months ago 10 days ago
C++ C++
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

octopus

Posts with mentions or reviews of octopus. We have used some of these posts to build our list of alternatives and similar projects.

Vcflib

Posts with mentions or reviews of Vcflib. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning Vcflib yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing octopus and Vcflib you can also consider the following projects:

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

libsequence - libsequence: a C++ class library for evolutionary genetic analysis

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

SeqAn - SeqAn's official repository.

rare-disease-wf - (WIP) best-practices workflow for rare disease

Wham - Structural variant detection and association testing

cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data

hap.py - Haplotype VCF comparison tools

octopus vs megahit Vcflib vs libsequence octopus vs TileDB-VCF Vcflib vs SeqAn octopus vs rare-disease-wf Vcflib vs Wham Vcflib vs TileDB-VCF Vcflib vs cellSNP Vcflib vs hap.py