ipyigv
igv-jupyter
| ipyigv | igv-jupyter | |
|---|---|---|
| 1 | 1 | |
| 26 | 154 | |
| - | 0.0% | |
| 10.0 | 1.8 | |
| over 3 years ago | over 1 year ago | |
| Python | JavaScript | |
| BSD 3-clause "New" or "Revised" License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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ipyigv
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
ipyigv is the lower level version of these. I found no documentation on how it's supposed to be used, but I'll try to get it to work as a last option, maybe raising a new webserver\docker container and supplying the files to it.
igv-jupyter
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
igv-notebook and igv-jupyter seem amazing but (unsurprisingly) I could not get them to run anywhere that wasn't a jupyter notebook. I get a kernel error as it tries to initialize itself within streamlit, and I'm not sure how to embed it anywhere else.
What are some alternatives?
tinycov - Command line tool to plot genomic coverage from a BAM file
configurable-http-proxy - node-http-proxy plus a REST API
pybamview - Browser based application for viewing bam alignments
igv-notebook - Module for embedding igv.js in an IPython notebook
dash-bio - Open-source bioinformatics components for Dash
ipyleaflet - A Jupyter - Leaflet.js bridge
kuwala - Kuwala is the no-code data platform for BI analysts and engineers enabling you to build powerful analytics workflows. We are set out to bring state-of-the-art data engineering tools you love, such as Airbyte, dbt, or Great Expectations together in one intuitive interface built with React Flow. In addition we provide third-party data into data science models and products with a focus on geospatial data. Currently, the following data connectors are available worldwide: a) High-resolution demographics data b) Point of Interests from Open Street Map c) Google Popular Times