igv-jupyter
tinycov
igv-jupyter | tinycov | |
---|---|---|
1 | 1 | |
154 | 13 | |
0.0% | - | |
1.8 | 1.5 | |
over 1 year ago | about 1 year ago | |
JavaScript | Python | |
MIT License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
igv-jupyter
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
igv-notebook and igv-jupyter seem amazing but (unsurprisingly) I could not get them to run anywhere that wasn't a jupyter notebook. I get a kernel error as it tries to initialize itself within streamlit, and I'm not sure how to embed it anywhere else.
tinycov
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
tinycov I keep finding these small tools built with python, but with no API available, so they require a combination of CLI and Docker to work
What are some alternatives?
configurable-http-proxy - node-http-proxy plus a REST API
ipyigv - A Jupyter wrapper for the igv.js library (representation of genomic data)
pyGenomeViz - A genome visualization python package for comparative genomics
pybamview - Browser based application for viewing bam alignments
dash-bio - Open-source bioinformatics components for Dash
igv-notebook - Module for embedding igv.js in an IPython notebook
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
kuwala - Kuwala is the no-code data platform for BI analysts and engineers enabling you to build powerful analytics workflows. We are set out to bring state-of-the-art data engineering tools you love, such as Airbyte, dbt, or Great Expectations together in one intuitive interface built with React Flow. In addition we provide third-party data into data science models and products with a focus on geospatial data. Currently, the following data connectors are available worldwide: a) High-resolution demographics data b) Point of Interests from Open Street Map c) Google Popular Times
ipyleaflet - A Jupyter - Leaflet.js bridge