immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods (by omnideconv)
AutoGeneS
By theislab
immunedeconv | AutoGeneS | |
---|---|---|
1 | 1 | |
401 | 53 | |
2.0% | - | |
6.9 | 0.0 | |
about 1 month ago | almost 3 years ago | |
R | Jupyter Notebook | |
GNU General Public License v3.0 or later | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
immunedeconv
Posts with mentions or reviews of immunedeconv.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-01-19.
-
Reference-Free Cell Type Deconvolution for BULK RNA-Seq?
Check the various methods under https://github.com/icbi-lab/immunedeconv
AutoGeneS
Posts with mentions or reviews of AutoGeneS.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-01-19.
-
Reference-Free Cell Type Deconvolution for BULK RNA-Seq?
I would suggest you to try out AutoGeneS. Not necessarily reference-free, but versatile and combines bulk/scRNA-seq data well. You can use the latter to generate the priors for cell proportions. https://github.com/theislab/AutoGeneS https://pubmed.ncbi.nlm.nih.gov/34293324/ HTH