AutoGeneS Alternatives
Similar projects and alternatives to AutoGeneS
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immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better AutoGeneS alternative or higher similarity.
AutoGeneS reviews and mentions
Posts with mentions or reviews of AutoGeneS.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-01-19.
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Reference-Free Cell Type Deconvolution for BULK RNA-Seq?
I would suggest you to try out AutoGeneS. Not necessarily reference-free, but versatile and combines bulk/scRNA-seq data well. You can use the latter to generate the priors for cell proportions. https://github.com/theislab/AutoGeneS https://pubmed.ncbi.nlm.nih.gov/34293324/ HTH
Stats
Basic AutoGeneS repo stats
1
53
0.0
almost 3 years ago
theislab/AutoGeneS is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of AutoGeneS is Jupyter Notebook.
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