Reference-Free Cell Type Deconvolution for BULK RNA-Seq?

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured

  • immunedeconv

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    • Check the various methods under https://github.com/icbi-lab/immunedeconv

  • AutoGeneS

    • I would suggest you to try out AutoGeneS. Not necessarily reference-free, but versatile and combines bulk/scRNA-seq data well. You can use the latter to generate the priors for cell proportions. https://github.com/theislab/AutoGeneS https://pubmed.ncbi.nlm.nih.gov/34293324/ HTH

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo
NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

Suggest a related project

Related posts

  • Quick tip: Using R, Rayshader and SingleStore Notebooks

    1 project | dev.to | 1 May 2024

  • How to generate a great website and reference manual for your R package

    1 project | dev.to | 10 Apr 2024

  • Array Languages: R vs. APL

    1 project | news.ycombinator.com | 21 Mar 2024

  • Data.table: R's data.table package extends data.frame

    1 project | news.ycombinator.com | 15 Mar 2024

  • Database-Like Ops Benchmark

    1 project | news.ycombinator.com | 9 Mar 2024