immunedeconv VS AutoGeneS

Compare immunedeconv vs AutoGeneS and see what are their differences.

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods (by omnideconv)
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omnideconv.org
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AutoGeneS

By theislab
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immunedeconv AutoGeneS
1 1
401 53
2.0% -
6.9 0.0
about 1 month ago almost 3 years ago
R Jupyter Notebook
GNU General Public License v3.0 or later MIT License
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immunedeconv

Posts with mentions or reviews of immunedeconv. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-01-19.

AutoGeneS

Posts with mentions or reviews of AutoGeneS. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-01-19.
  • Reference-Free Cell Type Deconvolution for BULK RNA-Seq?
    2 projects | /r/bioinformatics | 19 Jan 2022
    I would suggest you to try out AutoGeneS. Not necessarily reference-free, but versatile and combines bulk/scRNA-seq data well. You can use the latter to generate the priors for cell proportions. https://github.com/theislab/AutoGeneS https://pubmed.ncbi.nlm.nih.gov/34293324/ HTH