goatools
Python library to handle Gene Ontology (GO) terms (by tanghaibao)
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment (by eggnogdb)
| goatools | eggnog-mapper | |
|---|---|---|
| 2 | 1 | |
| 727 | 532 | |
| - | 2.8% | |
| 5.0 | 4.3 | |
| about 20 hours ago | about 2 months ago | |
| Python | Python | |
| BSD 2-clause "Simplified" License | GNU Affero General Public License v3.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
goatools
Posts with mentions or reviews of goatools.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Confused about gene name/id formats when doing enrichment with goatools
I'm trying to do enrichment analysis with goatools for the first time in my life, and I have no idea what I'm doing. (I'm a computer scientist with practically no bio background).
-
Cytoscape & GO
I eventually moved on to use this: https://github.com/tanghaibao/goatools
eggnog-mapper
Posts with mentions or reviews of eggnog-mapper.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing goatools and eggnog-mapper you can also consider the following projects:
galaxy - Data intensive science for everyone.
atlas - ATLAS - Three commands to start analyzing your metagenome data
FPL-Defence-Rotations - Best options to rotate defenders in Fantasy Premier League 2023-24
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Hail - Cloud-native genomic dataframes and batch computing
gisaid-uploader - Simplified & efficient GISAID interactions.