ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees (by YuLab-SMU)
patchwork
The Composer of ggplots (by thomasp85)
ggtree | patchwork | |
---|---|---|
2 | 7 | |
801 | 2,391 | |
1.0% | - | |
6.5 | 7.5 | |
30 days ago | about 2 months ago | |
R | R | |
- | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ggtree
Posts with mentions or reviews of ggtree.
We have used some of these posts to build our list of alternatives
and similar projects.
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Advice about R for bioinformatics (ggtree and metadata)
I don’t have a lot of experience with this particular package, but if a package provides vignettes I like to look through those. ggtree seems to provide an entire book, which may be helpful to you. You could also look at the examples in the docs, or other scripts people have written. If you find some, read through them line by line and try to understand what they’re doing. Run each line and look at what the output is. See if you can reproduce the example analyses on your own, maybe with different data. That’ll help you learn the packages with more training wheels than just striking out on your own, and then once you get more comfortable you should be able to branch out more.
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Exhaustively list all of a function's aes params?
I'd suggest digging into the code, if you're comfortable with it. The package is available up on github and also links to a reference book from the package author about how to use it. Looks like it has a few more examples than the tutorial you linked in another comment.
patchwork
Posts with mentions or reviews of patchwork.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-19.
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What is your favorite piece if Technogy or R package which you wish you would have discovered earlier ?
patchwork and ggrepel
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What is this chart type called? I’d like to recreate something similar in ggplot but I’m not sure what to Google for the code. Thanks guys
3 waffle charts, patched together with patchwork https://patchwork.data-imaginist.com/
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Dynamic subplot layout on Jupyter-lab
Here, I developed patchworklib that allows users to arrange subplots dynamically and determine the best layout from the multiple layouts. Patchworklib is inspired by patchwork library for R ggplot2, so it enables designing subplot layouts with only / and | operators.
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Pathcworklib: A subplot manager for intuitive layout in matplotlib
So, I developed patchworklib inspired by the patchwork library for R. With patchwroklib, after creating individual plots, you can quickly design multiple layouts combining them and select the best one among them.
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How to combine multiple figures together into one larger figure? What package is good for this?
There https://patchwork.data-imaginist.com
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Quick Tutorial: How to Create Side-by-Side Plots in ggplot2
The author of patchwork offers some justification for the package here compared to other R packages that facilitate the plotting of ggplot objects (e.g., gridExtra, cowplot). The syntax appears to be simpler than creating matrices to specify layouts as in gridExtra, but the examples given on the GitHub page don't really demonstrate how the package deals with the more complex layouts that are possible in gridExtra.
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Has anyone ever "tied" two graphs together in R?
Try the patchwork package which lets you glue graphs together. Amazing stuff!