ggpointdensity VS ggtranscript

Compare ggpointdensity vs ggtranscript and see what are their differences.

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot. (by LKremer)

ggtranscript

Visualizing transcript structure and annotation using ggplot2 (by dzhang32)
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ggpointdensity ggtranscript
1 1
398 118
- -
0.6 10.0
10 days ago almost 2 years ago
R R
GNU General Public License v3.0 only GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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ggpointdensity

Posts with mentions or reviews of ggpointdensity. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-11.

ggtranscript

Posts with mentions or reviews of ggtranscript. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-03.
  • representing gene/transcript layout with variants, suitable approaches?
    2 projects | /r/bioinformatics | 3 Mar 2023
    https://github.com/dzhang32/ggtranscript and https://github.com/kauralasoo/wiggleplotr look like good starting points, and since they output ggplot objects you can add some layers (like geom_segment or other geometries, and ggrepel for labels) to annotate them. Otherwise you can go the "from scratch" route using ggplot with some polygons and segments.

What are some alternatives?

When comparing ggpointdensity and ggtranscript you can also consider the following projects:

ggbernie - A ggplot2 geom for adding Bernie Sanders to ggplot2

seaborn - Statistical data visualization in Python

ggcats - The geom you always wished for adding cats to ggplot2

ggExtra - 📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements

metR - Tools for Easier Analysis of Meteorological Fields