ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree. (by etetoolkit)
ielex-data-and-tree
Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011). (by evotext)
| ete | ielex-data-and-tree | |
|---|---|---|
| 1 | 1 | |
| 754 | 6 | |
| 0.7% | - | |
| 9.6 | 10.0 | |
| about 1 month ago | about 2 years ago | |
| Python | Python | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ete
Posts with mentions or reviews of ete.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Any good tools to generate Newicks files for a large list of species?
Have you looked at python etetools: https://github.com/etetoolkit/ete
ielex-data-and-tree
Posts with mentions or reviews of ielex-data-and-tree.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Is there a website or app to compare Swadesh lists across languages?
There used to be a website with really excellent Swadesh lists. Unfortunately it's offline now, but you can view its contents on github here: https://github.com/evotext/ielex-data-and-tree
What are some alternatives?
When comparing ete and ielex-data-and-tree you can also consider the following projects:
bokeh - Interactive Data Visualization in the browser, from Python
pyCircos - python Circos
django-treebeard - Efficient tree implementations for Django
taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.
plotly - The interactive graphing library for Python :sparkles: This project now includes Plotly Express!
Biopython - Official git repository for Biopython (originally converted from CVS)
Redash - Make Your Company Data Driven. Connect to any data source, easily visualize, dashboard and share your data.